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ha ub k48 plasmid  (Addgene inc)


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    Structured Review

    Addgene inc ha ub k48 plasmid
    Ha Ub K48 Plasmid, supplied by Addgene inc, used in various techniques. Bioz Stars score: 94/100, based on 181 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/prk5+ha+ub+k48/pRK5-HA-Ubiquitin-K48+(Plasmid+%2317605)/pm41857610-77-3-8
    Average 94 stars, based on 181 article reviews
    ha ub k48 plasmid - by Bioz Stars, 2026-09
    94/100 stars

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    Related Articles

    Plasmid Preparation:

    Article Title: Lysosome-dependent FOXA1 ubiquitination contributes to luminal lineage of advanced prostate cancer.
    Article Snippet: Molecular Oncology published by John Wiley & Sons Ltd on behalf of Federation of European Biochemical Societies. nloaded from https://febs.onlinelibrary.w iley.com /doi/10.1002/1878-0261.13497, W iley O nline L ibrary on [21/01/2024]. .. See the T erm s and C onditions (https://onlinelibrary.w iley.com /term s-and-conditions) on W iley O nline L ibrary for rules of use; O A articles are governed by the applicable C reative C om m ons L icense (Addgene, Plasmid #22900), pRK5-HA-Ub-K6R (Addgene, Plasmid #121153), pRK5-HA-Ub-K11 (Addgene, Plasmid #22901), pRK5-HA-Ub-K27 (Addgene, Plasmid #22902), pRK5-HA-Ub-K29 (Addgene, Plasmid #22903), pRK5HA-Ub-K29R (Addgene, Plasmid #17602), pRK5-HAUb-K33 (Addgene, Plasmid #17607), pRK5-HA-Ub-K48 (Addgene, Plasmid #17605), pRK5-HA-Ub-K348R (Addgene, Plasmid #17604), pRK5-HA-Ub-K63 (Addgene, Plasmid #17606). .. Reference datasets were prepared from previously conducted studies on prostate cancer and were retrieved from the National Center for Biotechnology Information gene expression omnibus (GEO) with accession numbers GSE25136 as previously described [31] and from cBioPortal for cancer genomics (cbioportal.org) including the Shancheng et al. and Beltran et al. datasets.

    Ubiquitin Proteomics:

    Article Title: HCV infection induces ubiquitin-dependent degradation of LATS1, inactivating the Hippo pathway and upregulating transcription of the CYR61 and CTGF genes
    Article Snippet: The sequences of the inserts were verified by sequencing (Eurofins Genomics). .. N-terminal HA-tagged ubiquitin (Ub) expression plasmids, including pRK5-HA−Ub-WT, pRK5-HA−Ub-K6, pRK5-HA−Ub-K11, pRK5-HA−Ub-K27, pRK5-HA−Ub-K29, pRK5-HA−Ub-K33, pRK5-HA−Ub-K48, and pRK5-HA−Ub-K63, were purchased from Addgene (Watertown, MA). .. The mouse monoclonal antibodies (MAbs) used in this study were anti-FLAG (M2) MAb (F3165, Sigma-Aldrich), anti-β-actin (A5441; Sigma-Aldrich) anti-c-Myc (9E10) Mab (sc-40; Santa Cruz Biotechnology, Dallas, TX), anti-Itch Mab (611198, BD Transduction Laboratories, San Jose, CA), anti-Histone H3 (1G1) MAb (sc-517576; Santa Cruz Biotechnology), and anti-YAP (63.7) MAb (sc-101199; Santa Cruz Biotechnology).

    Article Title: Hepatitis C Virus-Induced ROS/JNK Signaling Pathway Activates the E3 Ubiquitin Ligase Itch to Promote the Release of HCV Particles via Polyubiquitylation of VPS4A.
    Article Snippet: .. N-terminal HAtagged ubiquitin (Ub) expression plasmids, pRK5-HA-Ub-WT, pRK5-HA-Ub-K0, pRK5-HA-Ub-K6, pRK5-HAUb-K11, pRK5-HA-Ub-K27, pRK5-HA-Ub-K29, pRK5-HA-Ub-K33, pRK5-HA-Ub-K48, and pRK5-HA-Ub-K63, were purchased from Addgene (Watertown, MA). ..

    Expressing:

    Article Title: HCV infection induces ubiquitin-dependent degradation of LATS1, inactivating the Hippo pathway and upregulating transcription of the CYR61 and CTGF genes
    Article Snippet: The sequences of the inserts were verified by sequencing (Eurofins Genomics). .. N-terminal HA-tagged ubiquitin (Ub) expression plasmids, including pRK5-HA−Ub-WT, pRK5-HA−Ub-K6, pRK5-HA−Ub-K11, pRK5-HA−Ub-K27, pRK5-HA−Ub-K29, pRK5-HA−Ub-K33, pRK5-HA−Ub-K48, and pRK5-HA−Ub-K63, were purchased from Addgene (Watertown, MA). .. The mouse monoclonal antibodies (MAbs) used in this study were anti-FLAG (M2) MAb (F3165, Sigma-Aldrich), anti-β-actin (A5441; Sigma-Aldrich) anti-c-Myc (9E10) Mab (sc-40; Santa Cruz Biotechnology, Dallas, TX), anti-Itch Mab (611198, BD Transduction Laboratories, San Jose, CA), anti-Histone H3 (1G1) MAb (sc-517576; Santa Cruz Biotechnology), and anti-YAP (63.7) MAb (sc-101199; Santa Cruz Biotechnology).

    Article Title: Hepatitis C Virus-Induced ROS/JNK Signaling Pathway Activates the E3 Ubiquitin Ligase Itch to Promote the Release of HCV Particles via Polyubiquitylation of VPS4A.
    Article Snippet: .. N-terminal HAtagged ubiquitin (Ub) expression plasmids, pRK5-HA-Ub-WT, pRK5-HA-Ub-K0, pRK5-HA-Ub-K6, pRK5-HAUb-K11, pRK5-HA-Ub-K27, pRK5-HA-Ub-K29, pRK5-HA-Ub-K33, pRK5-HA-Ub-K48, and pRK5-HA-Ub-K63, were purchased from Addgene (Watertown, MA). ..

    Article Title: Oxidative stress sensor Keap1 recognizes HBx protein to activate the Nrf2/ARE signaling pathway, thereby inhibiting hepatitis B virus replication
    Article Snippet: .. The N-terminal HA-tagged Ub expression plasmids pRK5-HA-Ub-WT, pRK5-HA-Ub-K6, pRK5-HAUb-K11, pRK5-HA-Ub-K27, pRK5-HA-Ub-K29, pRK5-HA-Ub-K33, pRK5-HA-Ub-K48, and pRK5-HA-Ub-K63 (all from Addgene, Watertown, MA, USA) and the plasmids pGL4.10-HBpg-Ce (A1676C/C1678A) ( 41 ) and pUC19-HBV-C-AT_JPN(ΔHBx) ( 53 ) were also used. . Antibodies The mouse monoclonal antibodies (MAbs) used in this study were anti-Nrf2 MAb (A-10; sc-365949; Santa Cruz Biotechnology, Santa Cruz, CA, USA), anti-Keap1 MAb (G-2; sc-365626; Santa Cruz Biotechnology), anti-c-Myc MAb (9E10; sc-40; Santa Cruz Biotechnology), anti-HBc MAb (clone 7B2, culture supernatant of the hybridoma) ( 54 , 55 ), and anti-glyceraldehyde-3-phosphate dehydrogenase (GAPDH) MAb (014-25524; FUJIFILM Wako Pure Chemical Industries). .. The rabbit MAbs used in this study were anti-Keap1 MAb (D6B12; 8047; Cell Signaling Technology, Beverly, MA, USA), anti-Nrf2 MAb (D1Z9C; 12721S; Cell Signaling Technology), and anti-FLAG MAb (D6W5B; 14793; Cell Signaling Technology).

    Article Title: Oxidative stress sensor Keap1 recognizes HBx protein to activate the Nrf2/ARE signaling pathway, thereby inhibiting hepatitis B virus replication
    Article Snippet: .. The N-terminal HA-tagged Ub expression plasmids pRK5-HA-Ub-WT, pRK5-HA-Ub-K6, pRK5-HAUb-K11, pRK5-HA-Ub-K27, pRK5-HA-Ub-K29, pRK5-HA-Ub-K33, pRK5-HA-Ub-K48, and pRK5-HA-Ub-K63 (all from Addgene, Watertown, MA, USA) and the plasmids pGL4.10-HBpg-Ce (A1676C/C1678A) ( 41 ) and pUC19-HBV-C-AT_JPN(ΔHBx) ( 53 ) were also used. .. The mouse monoclonal antibodies (MAbs) used in this study were anti-Nrf2 MAb (A-10; sc-365949; Santa Cruz Biotechnology, Santa Cruz, CA, USA), anti-Keap1 MAb (G-2; sc-365626; Santa Cruz Biotechnology), anti-c-Myc MAb (9E10; sc-40; Santa Cruz Biotechnology), anti-HBc MAb (clone 7B2, culture supernatant of the hybridoma) ( 54 , 55 ), and anti-glyceraldehyde-3-phosphate dehydrogenase (GAPDH) MAb (014-25524; FUJIFILM Wako Pure Chemical Industries).

    Mutagenesis:

    Article Title: Fyn deficiency inhibits oxidative stress by decreasing c-Cbl-mediated ubiquitination of Sirt1 to attenuate diabetic renal fibrosis.
    Article Snippet: Objective: Oxidative stress (OS) is the main cause leading to diabetic renal fibrosis.. Recently, Fyn was paid much attention on OS and emerged as a pivotal player in acute kidney injury, while whether Fyn regulates oxidative stress in chronic diabetes nephropathy (DN) has not been clarified yet.. The purpose of this study was to identify the role of Fyn in DN and elucidated its regulatory mechanism.

    Construct:

    Article Title: Fyn deficiency inhibits oxidative stress by decreasing c-Cbl-mediated ubiquitination of Sirt1 to attenuate diabetic renal fibrosis.
    Article Snippet: Objective: Oxidative stress (OS) is the main cause leading to diabetic renal fibrosis.. Recently, Fyn was paid much attention on OS and emerged as a pivotal player in acute kidney injury, while whether Fyn regulates oxidative stress in chronic diabetes nephropathy (DN) has not been clarified yet.. The purpose of this study was to identify the role of Fyn in DN and elucidated its regulatory mechanism.

    Bioprocessing:

    Article Title: Oxidative stress sensor Keap1 recognizes HBx protein to activate the Nrf2/ARE signaling pathway, thereby inhibiting hepatitis B virus replication
    Article Snippet: .. The N-terminal HA-tagged Ub expression plasmids pRK5-HA-Ub-WT, pRK5-HA-Ub-K6, pRK5-HAUb-K11, pRK5-HA-Ub-K27, pRK5-HA-Ub-K29, pRK5-HA-Ub-K33, pRK5-HA-Ub-K48, and pRK5-HA-Ub-K63 (all from Addgene, Watertown, MA, USA) and the plasmids pGL4.10-HBpg-Ce (A1676C/C1678A) ( 41 ) and pUC19-HBV-C-AT_JPN(ΔHBx) ( 53 ) were also used. . Antibodies The mouse monoclonal antibodies (MAbs) used in this study were anti-Nrf2 MAb (A-10; sc-365949; Santa Cruz Biotechnology, Santa Cruz, CA, USA), anti-Keap1 MAb (G-2; sc-365626; Santa Cruz Biotechnology), anti-c-Myc MAb (9E10; sc-40; Santa Cruz Biotechnology), anti-HBc MAb (clone 7B2, culture supernatant of the hybridoma) ( 54 , 55 ), and anti-glyceraldehyde-3-phosphate dehydrogenase (GAPDH) MAb (014-25524; FUJIFILM Wako Pure Chemical Industries). .. The rabbit MAbs used in this study were anti-Keap1 MAb (D6B12; 8047; Cell Signaling Technology, Beverly, MA, USA), anti-Nrf2 MAb (D1Z9C; 12721S; Cell Signaling Technology), and anti-FLAG MAb (D6W5B; 14793; Cell Signaling Technology).

    other:

    Article Title: Lysosome‐dependent FOXA1 ubiquitination contributes to luminal lineage of advanced prostate cancer
    Article Snippet: In vivo ubiquitination was performed by transfecting HEK293T, C4‐2B, and 22Rv1 cells with epitope‐tagged plasmids including pcDNA3‐Myc‐SKP2 (Addgene, Plasmid #19947), FOXA1 full‐length WT and truncated plasmids as previously generated [ ], FOXA1 lysine (K) mutated plasmids (GenScript, Piscataway, NJ, USA), HA‐Ub (Addgene, Plasmid #18712), pRK5‐HA‐Ub‐K6 (Addgene, Plasmid #22900), pRK5‐HA‐Ub‐K6R (Addgene, Plasmid #121153), pRK5‐HA‐Ub‐K11 (Addgene, Plasmid #22901), pRK5‐HA‐Ub‐K27 (Addgene, Plasmid #22902), pRK5‐HA‐Ub‐K29 (Addgene, Plasmid #22903), pRK5‐HA‐Ub‐K29R (Addgene, Plasmid #17602), pRK5‐HA‐Ub‐K33 (Addgene, Plasmid #17607), pRK5‐HA‐Ub‐K48 (Addgene, Plasmid #17605), pRK5‐HA‐Ub‐K348R (Addgene, Plasmid #17604), pRK5‐HA‐Ub‐K63 (Addgene, Plasmid #17606).



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    (A) Huh-7.5 cells were co-transfected with pCAG-Myc-LATS1, <t>pRK5-HA-Ubiquitin,</t> together with either pCAG-FLAG-Itch WT or pCAG-FLAG-Itch C868A. At 2 days post-transfection, the cells were harvested. The cell lysates were immunoprecipitated with anti-c-Myc antibody-conjugated Sepharose A beads, followed by immunoblotting with the indicated antibodies. Input samples were also analyzed by immunoblotting. β-actin was used as a loading control. (B) Huh-7.5 cells were co-transfected with pCAG-Myc-LATS1, pRK5-HA−Ubiquitin, together with either pCAG-FLAG−WWP1 WT or pCAG-FLAG−WWP1 C890A. At 2 days post-transfection, cells were harvested. The cell lysates were immunoprecipitated with anti-c-Myc antibody−conjugated Sepharose A beads, followed by immunoblotting with the indicated antibodies. Input samples were also immunoblotted, with β-actin serving as a loading control. (C) Huh-7.5 cells were infected with HCV J6/JFH1 at an MOI of 1 and co-transfected with pCAG-Myc-LATS1 and pRK5-HA−Ubiquitin, together with either pCAG-FLAG-Itch or pCAG-FLAG−WWP1. Cell lysates were immunoprecipitated using anti-c-Myc antibody−conjugated Sepharose A beads, followed by immunoblotting with the indicated antibodies. Input samples were also analyzed. β-actin was used as a loading control. (D) Huh-7.5 cells (3×10 5 cells per well in a 12-well plate) were transfected with 48 pmol of either control siRNA or Itch-specific siRNA. After 24 h, the cells were infected with HCV J6/JFH1 at an MOI of 2 and harvested at 2 days post-infection. The samples were analyzed by immunoblotting with the indicated antibodies. β-actin was used as a loading control. (E) Huh-7.5 cells (3×10 5 cells per well in a 12-well plate) were transfected with 48 pmol of either control siRNA or WWP1-specific siRNA. At 24 h after siRNA-transfection, the cells were infected with HCV J6/JFH1 at an MOI of 2. Cells were harvested at 2 days post-infection, and the samples were subjected to immunoblotting with the indicated antibodies. β-actin was used as a loading control.
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    Image Search Results


    (A) Huh-7.5 cells were co-transfected with pCAG-Myc-LATS1, pRK5-HA-Ubiquitin, together with either pCAG-FLAG-Itch WT or pCAG-FLAG-Itch C868A. At 2 days post-transfection, the cells were harvested. The cell lysates were immunoprecipitated with anti-c-Myc antibody-conjugated Sepharose A beads, followed by immunoblotting with the indicated antibodies. Input samples were also analyzed by immunoblotting. β-actin was used as a loading control. (B) Huh-7.5 cells were co-transfected with pCAG-Myc-LATS1, pRK5-HA−Ubiquitin, together with either pCAG-FLAG−WWP1 WT or pCAG-FLAG−WWP1 C890A. At 2 days post-transfection, cells were harvested. The cell lysates were immunoprecipitated with anti-c-Myc antibody−conjugated Sepharose A beads, followed by immunoblotting with the indicated antibodies. Input samples were also immunoblotted, with β-actin serving as a loading control. (C) Huh-7.5 cells were infected with HCV J6/JFH1 at an MOI of 1 and co-transfected with pCAG-Myc-LATS1 and pRK5-HA−Ubiquitin, together with either pCAG-FLAG-Itch or pCAG-FLAG−WWP1. Cell lysates were immunoprecipitated using anti-c-Myc antibody−conjugated Sepharose A beads, followed by immunoblotting with the indicated antibodies. Input samples were also analyzed. β-actin was used as a loading control. (D) Huh-7.5 cells (3×10 5 cells per well in a 12-well plate) were transfected with 48 pmol of either control siRNA or Itch-specific siRNA. After 24 h, the cells were infected with HCV J6/JFH1 at an MOI of 2 and harvested at 2 days post-infection. The samples were analyzed by immunoblotting with the indicated antibodies. β-actin was used as a loading control. (E) Huh-7.5 cells (3×10 5 cells per well in a 12-well plate) were transfected with 48 pmol of either control siRNA or WWP1-specific siRNA. At 24 h after siRNA-transfection, the cells were infected with HCV J6/JFH1 at an MOI of 2. Cells were harvested at 2 days post-infection, and the samples were subjected to immunoblotting with the indicated antibodies. β-actin was used as a loading control.

    Journal: bioRxiv

    Article Title: HCV infection induces ubiquitin-dependent degradation of LATS1, inactivating the Hippo pathway and upregulating transcription of the CYR61 and CTGF genes

    doi: 10.1101/2025.04.08.647823

    Figure Lengend Snippet: (A) Huh-7.5 cells were co-transfected with pCAG-Myc-LATS1, pRK5-HA-Ubiquitin, together with either pCAG-FLAG-Itch WT or pCAG-FLAG-Itch C868A. At 2 days post-transfection, the cells were harvested. The cell lysates were immunoprecipitated with anti-c-Myc antibody-conjugated Sepharose A beads, followed by immunoblotting with the indicated antibodies. Input samples were also analyzed by immunoblotting. β-actin was used as a loading control. (B) Huh-7.5 cells were co-transfected with pCAG-Myc-LATS1, pRK5-HA−Ubiquitin, together with either pCAG-FLAG−WWP1 WT or pCAG-FLAG−WWP1 C890A. At 2 days post-transfection, cells were harvested. The cell lysates were immunoprecipitated with anti-c-Myc antibody−conjugated Sepharose A beads, followed by immunoblotting with the indicated antibodies. Input samples were also immunoblotted, with β-actin serving as a loading control. (C) Huh-7.5 cells were infected with HCV J6/JFH1 at an MOI of 1 and co-transfected with pCAG-Myc-LATS1 and pRK5-HA−Ubiquitin, together with either pCAG-FLAG-Itch or pCAG-FLAG−WWP1. Cell lysates were immunoprecipitated using anti-c-Myc antibody−conjugated Sepharose A beads, followed by immunoblotting with the indicated antibodies. Input samples were also analyzed. β-actin was used as a loading control. (D) Huh-7.5 cells (3×10 5 cells per well in a 12-well plate) were transfected with 48 pmol of either control siRNA or Itch-specific siRNA. After 24 h, the cells were infected with HCV J6/JFH1 at an MOI of 2 and harvested at 2 days post-infection. The samples were analyzed by immunoblotting with the indicated antibodies. β-actin was used as a loading control. (E) Huh-7.5 cells (3×10 5 cells per well in a 12-well plate) were transfected with 48 pmol of either control siRNA or WWP1-specific siRNA. At 24 h after siRNA-transfection, the cells were infected with HCV J6/JFH1 at an MOI of 2. Cells were harvested at 2 days post-infection, and the samples were subjected to immunoblotting with the indicated antibodies. β-actin was used as a loading control.

    Article Snippet: N-terminal HA-tagged ubiquitin (Ub) expression plasmids, including pRK5-HA−Ub-WT, pRK5-HA−Ub-K6, pRK5-HA−Ub-K11, pRK5-HA−Ub-K27, pRK5-HA−Ub-K29, pRK5-HA−Ub-K33, pRK5-HA−Ub-K48, and pRK5-HA−Ub-K63, were purchased from Addgene (Watertown, MA).

    Techniques: Transfection, Immunoprecipitation, Western Blot, Control, Infection

    Huh-7.5 cells were infected with HCV J6/JFH1 at an MOI of 1, then co-transfected with pCAG-Myc-LATS1 and pRK5-HA-ubiquitin, together with pCAG-FLAG-Itch. After 2 days, the cells were harvested with or without pretreatment with JNK inhibitor SP6000125 (30 µM for 30 h), and the lysates were immunoprecipitated with anti-c-Myc antibody−conjugated Sepharose A beads, followed by immunoblotting with the indicated antibodies. Input samples were also analyzed by immunoblotting. β-actin was used as a loading control.

    Journal: bioRxiv

    Article Title: HCV infection induces ubiquitin-dependent degradation of LATS1, inactivating the Hippo pathway and upregulating transcription of the CYR61 and CTGF genes

    doi: 10.1101/2025.04.08.647823

    Figure Lengend Snippet: Huh-7.5 cells were infected with HCV J6/JFH1 at an MOI of 1, then co-transfected with pCAG-Myc-LATS1 and pRK5-HA-ubiquitin, together with pCAG-FLAG-Itch. After 2 days, the cells were harvested with or without pretreatment with JNK inhibitor SP6000125 (30 µM for 30 h), and the lysates were immunoprecipitated with anti-c-Myc antibody−conjugated Sepharose A beads, followed by immunoblotting with the indicated antibodies. Input samples were also analyzed by immunoblotting. β-actin was used as a loading control.

    Article Snippet: N-terminal HA-tagged ubiquitin (Ub) expression plasmids, including pRK5-HA−Ub-WT, pRK5-HA−Ub-K6, pRK5-HA−Ub-K11, pRK5-HA−Ub-K27, pRK5-HA−Ub-K29, pRK5-HA−Ub-K33, pRK5-HA−Ub-K48, and pRK5-HA−Ub-K63, were purchased from Addgene (Watertown, MA).

    Techniques: Infection, Transfection, Immunoprecipitation, Western Blot, Control